Comprehensive Stool Analysis

Comprehensive Stool Analysis

  • $520.00

  • Ex Tax:$520.00
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The Key to Optimal Health

Imbalances in gastrointestinal function can lead to both local and systemic health issues, with the gut microbiome playing a vital role in supporting overall health. Our Comprehensive Stool Analysis profile helps identify the underlying causes of acute and chronic symptoms, enabling providers to create personalized treatment plans.

The Comprehensive Stool Analysis measures key markers of digestion, absorption, and intestinal function, including a comprehensive bacteriology and yeast culture to detect beneficial, imbalanced, and dysbiotic flora. We use gold standard methods, such as PCR, to identify infectious pathogens and parasites, and perform antimicrobial susceptibility testing on cultured bacterial and fungal species to recommend prescriptive and natural agents.

Turnaround Time: 2-4+ weeks

Sample Reports

The Comprehensive Stool Analysis test report is a useful resource for practitioner who want to uncover potential causes of gastrointestinal symptoms and chronic systemic conditions.

This test report groups the markers on the Comprehensive Stool Analysis into the following clinically important groups:

  • GI Pathogen Profile, Multiplex PCR; stool
  • Parasitology; Microscopy
  • Stool Chemistries
  • Bacterial Susceptibilities to Natural Antibacterials & Prescriptive Agents
Comprehensive Stool Analysis with Parasitology Sample Test Report (Sample Report)

Test Prep and Instructions

MosaicDX offers patient-friendly sample collection kits that simplify testing. Our kits include visual, step-by-step instructions for test preparation and sample collection, personalized shipping cards, and pediatric collection bags if needed. With MosaicDX, patients can easily collect samples for testing with confidence and accuracy.

What Patients Might Benefit from the Comprehensive Stool Analysis

The Comprehensive Stool Analysis is indicated for all chronic GI problems, for acute bowel pattern changes, and for many systemic diseases.

  • Allergies
  • Autoimmune Disorders
  • Cardiovascular Disease
  • Celiac Disease
  • Diabetes
  • Diarrhea, Constipation, Abdominal Distension
  • Food Sensitivities
  • Gastrointestinal Symptoms
  • IBD
  • IBS
  • Immune System Imbalances
  • Inflammation
  • Joint Pain
  • Leaky Gut
  • Malnutrition
  • Mood Disorders
  • Neurological Disorders
  • Weight Concerns


Why Conduct a Comprehensive Stool Analysis?

The Comprehensive Stool Analysis + Parasitology (CSAP) is an essential diagnostic tool that enables practitioners to assess the status of beneficial and imbalanced commensal bacteria, pathogenic bacteria, yeast/fungus, and parasites. The identification of pathogenic species and susceptibility testing assists in the selection of the most suitable pharmaceutical or natural treatment agents.

Our Comprehensive Stool Analysis test measures:

  • Digestion and absorption of nutrients (Pancreatic Elastase, Muscle Fibers, and Vegetable Fibers)
  • Elimination efficiency of undigested food residues and toxins
  • Assessment of the gut microbiome, measuring levels of healthy bacterial flora versus potentially pathogenic bacteria species, yeast, and parasites
  • Culture and sensitivities of pathogenic yeast and bacteria
  • Infectious pathogens (EIA evaluation for Campylobacter, Enterohemorrhagic E. coli cytotoxin, Giardia lamblia, and Cryptosporidium)
  • Indices and markers of intestinal immune function (Secretory IgA)
  • Indices and markers of inflammation (Calprotectin, Lactoferrin, and Lysozyme)
  • Indices and markers of intestinal physiology and of intestinal health (Presence of RBC, WBC, Mucus, Occult Blood, Fecal pH, and Short Chain Fatty Acids)

Efficient remediation of GI dysfunctions involves a comprehensive approach that includes elimination of pathogens and irritants, supplementation of hydrochloric acid, pancreatic enzymes, and pre- and probiotics, and repair of the mucosal barrier.


The Comprehensive Stool Analysis measures key markers of digestion, absorption, and intestinal function, including a comprehensive bacteriology and yeast culture, GI pathogens, parasitology, macroscopic appearance, stool chemistries, bacterial susceptibilities and yeast/susceptibilities.

See detailed list of markers below organized by clinically important groups:

Bacterial Culture 

73 possible species of imbalanced and dysbiotic bacteria
  • 4 species of beneficial bacteria
Yeast (Mycology) Culture 

48 possible yeast and fungal species
  • Yeast
GI Pathogens – Multiplex PCR 

  • Adenovirus F40/41
  • Norovirus GI/GII
  • Rotavirus A

Pathogenic Bacteria:

  • Campylobacter (C. jejuni, C. coli and C. lari)
  • Clostridioides difficile (Toxin A/B)
  • Escherichia coli O157
  • Enterotoxigenic Escherichia coli (ETEC) lt/st
  • Salmonella spp.
  • Shiga-like toxin-producing Escherichia coli (STEC) stx1/stx2
  • Shigella (S. boydii, S. sonnei, S. flexneri & S. dysenteriae)
  • Vibrio cholerae
Parasitology (Microscopy) 

  • Cryptosporidium (C. parvum and C. hominis)
  • Entamoeba histolytica
  • Giardia duodenalis (intestinalis & lamblia)


  • Balantidium coli
  • Blastocystis spp.
  • Chilomastix mesnili
  • Dientamoeba fragilis
  • Endolimax nana
  • Entamoeba coli
  • Entamoeba hartmanni
  • Entamoeba polecki
  • Enteromonas hominis
  • Giardia duodenalis
  • Iodamoeba bütschlii
  • Isospora belli
  • Pentatrichomonas hominis
  • Retortamonas intestinalis

Nematodes – Roundworms:

  • Ascaris lumbricoides
  • Capillaria hepatica
  • Capillaria philippinensis
  • Enterobius vermicularis
  • Strongyloides stercoralis
  • Trichuris trichiura
  • Hookworm

Cestodes – Tapeworms:

  • Diphyllobothrium latum
  • Dipylidium caninum
  • Hymenolepis diminuta
  • Hymenolepis nana
  • Taenia

Trematodes – Flukes:

  • Clonorchis sinensis
  • Fasciola hepatica/Fasciolopsis buski
  • Heterophyes heterophyes
  • Paragonimus westermani
Other Markers 

  • RBC
  • WBC
  • Muscle fibers
  • Vegetable fibers
  • Charcot-Leyden Crystals
  • Pollen
Macroscopic Appearance 

Stool Chemistries 

  • Elastase
  • Fat Stain
  • Carbohydrates


  • Lactoferrin
  • Calprotectin
  • Lysozyme


  • Secretory IgA

Short Chain Fatty Acids:

  • % Acetate
  • % Propionate
  • % Butyrate
  • % Valerate
  • Butyrate
  • Total SCFA’s

Intestinal Health Markers:

  • pH
  • Occult Blood

Macroscopic Appearance:

  • Color
  • Consistency
Bacterial Susceptibilities 

Natural Antibacterials:
  • Berberine
  • Black Walnut
  • Caprylic Acid
  • Uva Ursi
  • Oregano
  • Grapefruit Seed Extract
  • Silver

Prescriptive Agents:

  • Amoxicillin-Clavulanic Acid
  • Ampicillin
  • Cefazolin
  • Ceftazidime
  • Ciprofloxacin
  • Sulfamethoxazole / Trimethoprim

Natural Antibacterials:
  • Berberine
  • Caprylic Acid
  • Uva Ursi
  • Plant Tannins
  • Oregano
  • Undecylenic Acid
  • Grapefruit Seed Extract

Non-Absorbed Antifungals:

  • Nystatin

Prescriptive Agents:

  • Fluconazole
  • Itraconazole
  • Ketoconazole

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